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AceDB
Genome database system developed to provide a custom database kernel and a nonstandard data model for the flexible of scientific data.
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BioPHP
Open source project aimed at providing a scripting language for the bioinformatics field.
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Biopython
Project initiated by an international association of software developers. Aims to build freely available Python tools for computational molecular biology.
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BioQuery
Bioinformatics program developed to help formulate strategies in organizing biomedical databases.
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BioRuby
Project aimed at implementing an integrated environment for bioinformatics with the Ruby language.
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BioWarehouse
Open-source software environment developed to enable the integration of a set of biological databases into a single physical database management system.
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Cell Electrophysiology Simulation Environment (CESE)
Comprehensive framework intended for the performance of computational electrophysiological simulations.
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InterMine
Open source data warehouse system. Enables the creation of databases of biological data accessible with sophisticated web query tools.
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NeoBio
Library of Java-implemented bioinformatics algorithms. Relies on the SMAWK algorithm and makes use of Lempel-Ziv compression.