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  • AceDB  - Genome database system developed to provide a custom database kernel and a nonstandard data model for the flexible of scientific data.
  • Biochemical Algorithms Library (BALL)  - C++ application framework specifically designed to reduce development times in the field of computational molecular biology and molecular modeling.
  • BioPHP  - Open source project aimed at providing a scripting language for the bioinformatics field.
  • Biopython  - Project initiated by an international association of software developers. Aims to build freely available Python tools for computational molecular biology.
  • BioQuery  - Bioinformatics program developed to help formulate strategies in organizing biomedical databases.
  • BioRuby  - Project aimed at implementing an integrated environment for bioinformatics with the Ruby language.
  • BioWarehouse  - Open-source software environment developed to enable the integration of a set of biological databases into a single physical database management system.
  • Carbon Labeling Experiment Markup Language (CLEML)  - SBML dialect format developed to represent and facilitate the exchange of 13C metabolic flux analysis models.
  • Cell Electrophysiology Simulation Environment (CESE)  - Comprehensive framework intended for the performance of computational electrophysiological simulations.
  • EST2uni  - Parallel tool for database creation and automated EST analysis. Features a data mining web interface.
  • InterMine  - Open source data warehouse system. Enables the creation of databases of biological data accessible with sophisticated web query tools.
  • NeoBio  - Library of Java-implemented bioinformatics algorithms. Relies on the SMAWK algorithm and makes use of Lempel-Ziv compression.
 
 
 
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