Bioinformatics Software Development

• AceDB  - Genome database system developed to provide a custom database kernel and a nonstandard data model for the flexible of scientific data.
• BioPHP  - Open source project aimed at providing a scripting language for the bioinformatics field.
• Biopython  - Project initiated by an international association of software developers. Aims to build freely available Python tools for computational molecular biology.
• BioQuery  - Bioinformatics program developed to help formulate strategies in organizing biomedical databases.
• BioRuby  - Project aimed at implementing an integrated environment for bioinformatics with the Ruby language.
• BioWarehouse  - Open-source software environment developed to enable the integration of a set of biological databases into a single physical database management system.
• Cell Electrophysiology Simulation Environment (CESE)  - Comprehensive framework intended for the performance of computational electrophysiological simulations.
• InterMine  - Open source data warehouse system. Enables the creation of databases of biological data accessible with sophisticated web query tools.
• NeoBio  - Library of Java-implemented bioinformatics algorithms. Relies on the SMAWK algorithm and makes use of Lempel-Ziv compression.