Bioinformatics Software

• Software Development

• Science: Biology: Software 

• AB-BLAST  - Bioinformatics software featuring robust data management, a sensitive and flexible core BLAST engine, and long-term consistent behavior.
• AnnHyb  - Tool designed for working with and managing nucleotide sequences in multiple formats. Site provides details on the features, screenshots, and documentation.
• The ARB Project  - Application for rRNA sequence data collection and rRNA based identification.
• BiBiServ  - Offering tools and computer applications of use and interest to those working in the bioinformatics field.
• Biochemfusion: Proteax  - Provides the ability to add post-translational modifications and chemical features to protein sequences, sequence and structural identity checks on protein registrations, and protein exporting and importing in GPMAW format for mass spectrometry analysis.
• Bioconductor  - Open source software package for genomic data analysis and comprehension.
• Bioinformatics Software Tools  - Collection of bioinformatics related applications including databases and tools for sequence alignment and analysis, sequence manipulation, and structural analysis.
• GeneSpotter  - Software application designed to perform image analyses on biochip data.
• HMMER  - Freely distributed software useful for protein sequence analysis.
• Interactive Structure based Sequences Alignment Program (STRAP)  - Free program developed to align proteins by sequence and 3D structure. Supports the simultaneous analysis of hundreds of proteins. Screenshots provided.
• The KoriBlast Platform  - Graphical software environment designed to facilitate the exploration of biological sequence data banks. Provides unified access to local and remote sequence and data repositories.
• Lynnon Corporation  - Specializes in developing bioinformatics software for education, research and development purposes.
• MAFFT  - Web-based multiple alignment program for amino acid or nucleotide sequences.
• Mauve  - System intended to efficiently construct multiple genome alignments amidst large-scale evolutionary events.
• MolTalk  - Computational software suite created for structural bioinformatics.
• Neno Bio Center  - Provides resources for comparative genomics, genetic visualization, and sequence analysis.
• pDRAW32  - Free DNA sequence analysis and plotting software for Windows, Mac, and Linux.
• PhyloSort  - Java tool developed to sort phylogenetic trees. Searches for monophyletic relationship among groups of taxa, filters by tree and family complexity, clusters genes into gene families, and groups OTUs using a taxonomy reference tree.
• Premier Biosoft International  - Software company provides services and tools useful to computer scientists and molecular biologists.
• SEQ Tools  - Software suite created for nucleotide and protein sequence analysis and handling.
• SEquence analysis using WEb Resources (SeWeR)  - Application written in JavaScript.2 operating as an integrated portal to common web-based services in bioinformatics.
• Sfold  - Software for statistical folding and the rational design of nucleic acids. Includes details on application modules and references.
• Structure Based Alignment Program (STRAP)  - Free computer program that aligns proteins by sequence and 3D-structure. Supports the analysis of hundreds of proteins and integrates amino acid sequence, secondary structure, and residue annotation.
• Unipro UGENE  - Cross-platform genome analysis software suite. Features visual and interactive genome browsing, chromatograms visualization, phylogenetic analysis, protein back translation, and a fast repeat finder.