- 3D-JIGSAW
- Creates three-dimensional models for proteins according to homologues of known structure.
- BetaTPred
- Server developed for predicting ß-turns in a protein using an amino acid sequence.
- Bioexplorer Toolbar
- Provides quick access to NCBI databases and other biological resources on the Internet.
- COLORADO-3D
- Web-based tool designed to facilitate the visual analysis of various features in three-dimensional protein structures.
- ConSurf
- Server for identifying functional regions in proteins through the surface-mapping of phylogenetic information.
- DisEMBL
- Computational tool developed for the prediction of disordered or unstructured regions within a protein sequence.
- ESyPred3D
- Automated homology modeling program developed by the Molecular Biology Research Unit of the University of Namur in Belgium.
- iMolTalk
- Interactive, web-based computational analyses service for Structural Biology.
- JAligner
- Open source Java implementation of the Smith-Waterman algorithm designed for biological sequence alignment.
- Melanie
- Two-dimensional electrophoresis gel analysis platform. Analyzes, annotates, and queries complex 2-D gel samples.
- NUMODs Motifs Finder
- Online tool for the identification of putative NUMODs in sequences.
- Phyre
- Protein Homology/analogY Recognition Engine - a molecular biology tool available for academic and commercial users.
- PredictProtein
- Structure and function prediction and sequence analysis tool. Site presents downloads, related news, and a discussion board.
- Protein Function Prediction
- Automated protein function prediction server offering a representation of the statistical probability that a sequence matches a listed function annotations according to known associations gathered from publicly available functional databases.
- ProtFun 2.2 Server
- Generates predictions of protein function from sequence. Collects information on various post-translational and localizational aspects of the protein for integration into final predictions.
- PSIPRED
- Protein structure prediction server. Performs predictions in three methods and provides results through email.
- Rebase
- Online restriction enzyme database searchable by category, keyword, or enzyme name.
- RestrictionMapper
- Web-based restriction mapping tool developed as a Perl script that accesses a MySQL database.
- Secondary Structure Matching
- Interactive tool for three-dimensional protein structure comparison and structure alignment.
- Swiss-Model
- Automated comparative protein modeling and structure homology-modeling server. Makes protein modeling accessible to all biochemists and molecular biologists worldwide.
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