Molecular Biology Tools

• BetaTPred  - Server developed for predicting ß-turns in a protein using an amino acid sequence.
• Bioexplorer Toolbar  - Provides quick access to NCBI databases and other biological resources on the Internet.
• COLORADO-3D  - Web-based tool designed to facilitate the visual analysis of various features in three-dimensional protein structures.
• ConSurf  - Server for identifying functional regions in proteins through the surface-mapping of phylogenetic information.
• DisEMBL  - Computational tool developed for the prediction of disordered or unstructured regions within a protein sequence.
• ESyPred3D  - Automated homology modeling program developed by the Molecular Biology Research Unit of the University of Namur in Belgium.
• iMolTalk  - Interactive, web-based computational analyses service for Structural Biology.
• JAligner  - Open source Java implementation of the Smith-Waterman algorithm designed for biological sequence alignment.
• Melanie  - Two-dimensional electrophoresis gel analysis platform. Analyzes, annotates, and queries complex 2-D gel samples.
• NUMODs Motifs Finder  - Online tool for the identification of putative NUMODs in sequences.
• Phyre  - Protein Homology/analogY Recognition Engine - a molecular biology tool available for academic and commercial users.
• PredictProtein  - Structure and function prediction and sequence analysis tool. Site presents downloads, related news, and a discussion board.
• Protein Function Prediction  - Automated protein function prediction server offering a representation of the statistical probability that a sequence matches a listed function annotations according to known associations gathered from publicly available functional databases.
• ProtFun 2.2 Server  - Generates predictions of protein function from sequence. Collects information on various post-translational and localizational aspects of the protein for integration into final predictions.
• PSIPRED  - Protein structure prediction server. Performs predictions in three methods and provides results through email.
• Rebase  - Online restriction enzyme database searchable by category, keyword, or enzyme name.
• RestrictionMapper  - Web-based restriction mapping tool developed as a Perl script that accesses a MySQL database.
• Secondary Structure Matching  - Interactive tool for three-dimensional protein structure comparison and structure alignment.
• Swiss-Model  - Automated comparative protein modeling and structure homology-modeling server. Makes protein modeling accessible to all biochemists and molecular biologists worldwide.