Machine Learning Software

BayesBuilder

Program designed for constructing and testing Bayesian networks. Available for free noncommercial uses.

ClassMarker

Application useful for identifying genes that can differentiate among diseases as well as the genes associated with diseases that share common molecular phenomena.

FastMix

Tool developed to generate Gaussian mixture models for large datasets using EM clustering algorithms.

HMMER

Biosequence analysis application that makes use of profile hidden Markov models (profile HMMs).

ILK Software

Offers downloadable software packages for machine learning and Natural Language Processing (NLP).

KEEL

Software designed to assess evolutionary algorithms for data mining problems.

LingPipe

Suite of Java libraries for the linguistic analysis of human language.

Machine Learning Software Packages

Collection of machine learning software from the Carnegie Mellon University Artificial Intelligence Repository.

MALLET

Integrated suite of Java codes designed for statistical natural language, document classification, clustering, information extraction, and other machine learning applications to text.

Meta-MEME

Software toolkit useful for building and using motif-based hidden Markov models of DNA and proteins.

The Spider

Object oriented environment designed to handle large unsupervised, supervised, or semi-supervised machine learning problems.

Torch

Machine learning library written in simple C++. Supports vector machines and features speech recognition tools.

Weka

Java data mining software offering a collection of machine learning algorithms for data pre-processing, classification, regression, clustering, association rules, visualization, and other data mining tasks.

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