- BayesBuilder
- Program designed for constructing and testing Bayesian networks. Available for free noncommercial uses.
- BNet.EngineKit
- Developer toolkit enables researchers and engineers to embed belief networks in software applications.
- ClassMarker
- Application useful for identifying genes that can differentiate among diseases as well as the genes associated with diseases that share common molecular phenomena.
- ELIE
- Adaptive information extraction tool. Provides a number of text processing tools including POS tagging, chunking, and stemming.
- FastMix
- Tool developed to generate Gaussian mixture models for large datasets using EM clustering algorithms.
- HMMER
- Biosequence analysis application that makes use of profile hidden Markov models (profile HMMs).
- KEEL
- Software designed to assess evolutionary algorithms for data mining problems.
- LingPipe
- Suite of Java libraries for the linguistic analysis of human language.
- MALLET
- Integrated suite of Java codes designed for statistical natural language, document classification, clustering, information extraction, and other machine learning applications to text.
- Meta-MEME
- Software toolkit useful for building and using motif-based hidden Markov models of DNA and proteins.
- Observable Operator Modeling Kit
- Tool that features a learning algorithm for estimating Observable Operator Models from training data.
- OpenCyc
- Open source version of the Cyc technology, a general knowledge base and common sense reasoning engine.
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